Day 1 (September, 17th): Introduction to Genomic Analysis

Morning (10:15 – 13:45)

  10:15 Registration and Welcome
  10:45 Opening remarks
  11:00 Introduction to Sequence data / pre-processing workflow
  11:30 Introduction to Germline variant discovery Best Practices workflows
  12:00 Coffee/tea break
  12:30 Introduction to Somatic variant discovery Best Practices workflows
  13:00 Introduction to pipelining with WDL + Cromwell + FireCloud
  13:30 Closing question time

Lunch Time (14:00 – 15:00)

Afternoon (15:15 – 18:15)

  15:15 Mapping
  15:40 Marking Duplicates
  16:05 Base recalibration (BQSR)
  16:30 Coffee/tea break
  17:00 Hands-on data exploration and IGV basics + GATK4 basics